PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g14410
Common NameGSCOC_T00030225001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NF-YC
Protein Properties Length: 123aa    MW: 13466.6 Da    PI: 9.7419
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g14410genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC105.72.9e-33221031999
        NF-YC  19 helPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                  h++Plarikki+k + +dvkmis eaP++lskacelf+ e+t r+w  + + krrtl+k d+a+av  tdifdflv+ v ++
  Cc08_g14410  22 HSFPLARIKKIMKkSGDDVKMISGEAPIVLSKACELFVEEITRRAWRMTMQGKRRTLHKEDVASAVMATDIFDFLVNLVSEH 103
                  99**********825689**********************************************************999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.34E-271796IPR009072Histone-fold
PfamPF008081.7E-222387IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.9E-3124101IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MRQAGTYSGI LSGGISGKTG PHSFPLARIK KIMKKSGDDV KMISGEAPIV LSKACELFVE  60
EITRRAWRMT MQGKRRTLHK EDVASAVMAT DIFDFLVNLV SEHSATSEQE EITTPPAMDL  120
KR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C2e-242210040117HapE
4g92_C2e-242210040117HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022730.11e-63PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ9ZVL31e-30NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBLA0A068UQ961e-86A0A068UQ96_COFCA; Uncharacterized protein
STRINGVIT_02s0025g03770.t011e-61(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128811720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.37e-32nuclear factor Y, subunit C3